Download a fasta file

Downloads FASTA sequence files from the NCBI nr, SWISSPROT/UNIPROT, OR RCSB PDB databases.

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Download a Fasta File. Mascot can search both protein and nucleic acid sequences. For a PMF search, the database should be either protein sequences or 

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Their script to download genomes, ncbi-genome-download , goes through NCBI's ftp For a quick example here, I'm going to pull fasta files for all RefSeq 

Checking the 'Download sequence' box will also download a FASTA file of the whole genome sequence for offline use. All available genomes are listed, even 

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